New OS X installer w/6.24 - please test.

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Beberg
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New OS X installer w/6.24 - please test.

Post by Beberg » Mon Jan 26, 2009 7:52 pm

OK, here is the installer version to test, Intel and PPC universal as before. No major fixes other then the 6.24 client inside.

http://www.stanford.edu/~beberg/Folding@home-6.24.mpkg.zip

This version has no expiration, so will be promoted to release unless something is wrong.

Beberg
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Posts: 566
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Location: Stanford

Re: New OS X installer w/6.24 - please test.

Post by Beberg » Tue Jan 27, 2009 11:41 pm

The installer has been refreshed with a couple tweaks to the prefPane and the launchd files. Same location and still a non-expiring release candidate.

werty316
Posts: 145
Joined: Tue Feb 19, 2008 6:29 pm

Re: New OS X installer w/6.24 - please test.

Post by werty316 » Sun Feb 01, 2009 4:27 am

Is the release of this new version the reason why my two Intel Quadcore iMac machines have stop folding? Both of these machine ran the SMP v6.20 client up to this point.

I guess I'll either have to stop in the office on Sunday or wait until I'm back at work on Monday to update both machines.

susato
Site Moderator
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Re: New OS X installer w/6.24 - please test.

Post by susato » Sun Feb 01, 2009 5:11 pm

Your last couple of WU's have the "hang on completion" bug. It's probably nothing to do with the new client.

If this is the problem, these directions ought to fix it: viewtopic.php?f=6&t=8200&p=81168#p81168

werty316
Posts: 145
Joined: Tue Feb 19, 2008 6:29 pm

Re: New OS X installer w/6.24 - please test.

Post by werty316 » Mon Feb 09, 2009 9:49 pm

So far this version is running just fine.

rdforbes
Posts: 11
Joined: Thu Jul 31, 2008 10:07 pm

Re: New OS X installer w/6.24 - please test.

Post by rdforbes » Wed Sep 09, 2009 3:19 pm

Received this error message this morning (sorry the text is wrapped wrong in my console log):

Code: Select all

9/9/09 7:42:24 AM   NNODES=4, MYRAN
9/9/09 7:42:24 AM   K=0, HOSTNAME=Ron-MacPr
9/9/09 7:42:24 AM   o.local
9/9/09 7:42:24 AM   NNODES=4, MYR
9/9/09 7:42:24 AM   ANK=1, HOSTNAME=Ron-Mac
9/9/09 7:42:24 AM   Pro.local
9/9/09 7:42:24 AM   NNOD
9/9/09 7:42:24 AM   ES=4, MYRANK=2,
9/9/09 7:42:24 AM   HOSTNAME=Ron
9/9/09 7:42:24 AM   -MacPro.loca
9/9/09 7:42:24 AM   l
9/9/09 7:42:24 AM   NNODES=4, MYR
9/9/09 7:42:24 AM   ANK=3, HOSTNAME=Ron-MacPro.local
9/9/09 7:42:24 AM   NODEID=0 argc=20
9/9/09 7:42:24 AM   NODEID=1 argc=20
9/9/09 7:42:24 AM   NODEID=2 argc=20
9/9/09 7:42:24 AM   NODEID=3 ar
9/9/09 7:42:24 AM   gc=20
9/9/09 7:42:24 AM   Reading fil
9/9/09 7:42:24 AM   e work/wudata_08.tpr, V
9/9/09 7:42:24 AM   ERSION 3.3.
9/9/09 7:42:24 AM   99_developmen
9/9/09 7:42:24 AM   t_20070618 (single precision)
9/9/09 7:42:26 AM   Note: tpx file_vers
9/9/09 7:42:26 AM   ion 48, software version 68
9/9/09 7:42:26 AM   NOTE: The tpr file used for
9/9/09 7:42:26 AM   this simulation is in an old format, for le
9/9/09 7:42:26 AM   ss memory usage and possibly more performance create a new tpr file with an up
9/9/09 7:42:26 AM   to date version of grompp
9/9/09 7:42:26 AM   Making 1D domain decomposition 1 x 1
9/9/09 7:42:26 AM    x 4
9/9/09 7:42:26 AM   starting mdrun '229
9/9/09 7:42:26 AM   11 system'
9/9/09 7:42:26 AM   49750000 steps,  99500.0 ps (continu
9/9/09 7:42:26 AM   ing from step 49500000,  990
9/9/09 7:42:26 AM   00.0 ps).
9/9/09 7:43:02 AM   ---------------------
9/9/09 7:43:02 AM   ----------------------------------
9/9/09 7:43:02 AM   Program mdrun
9/9/09 7:43:02 AM   , VERSI
9/9/09 7:43:02 AM   ON 4.0.99_development_200
9/9/09 7:43:02 AM   90605
9/9/09 7:43:02 AM   Source code file: md.c, line: 2169
9/9/09 7:43:02 AM   Fatal error:
9/9/09 7:43:02 AM   NaN detected at step 49500000
9/9/09 7:43:02 AM   For mor
9/9/09 7:43:02 AM   e information and tips for trouble shooting please check the GROMACS Wiki at
9/9/09 7:43:02 AM   http://wiki.gromacs
9/9/09 7:43:02 AM   .org/index.php/Errors
9/9/09 7:43:02 AM   -------------------------------
9/9/09 7:43:02 AM   ------------------------
9/9/09 7:43:02 AM   Thanx for Using GROMACS
9/9/09 7:43:02 AM   - Have a Nice Day
9/9/09 7:43:02 AM   Error on node 2, will try to stop all the nodes
9/9/09 7:43:02 AM   Halting parallel program mdrun
9/9/09 7:43:02 AM    on CPU 2 out of 4
9/9/09 7:43:02 AM   -------------------------------------------------------
9/9/09 7:43:02 AM   Program mdrun, VERS
9/9/09 7:43:02 AM   ION 4.0.99_development
9/9/09 7:43:02 AM   _20090605
9/9/09 7:43:02 AM   So
9/9/09 7:43:02 AM   urce code fi
9/9/09 7:43:02 AM   le: md.c, l
9/9/09 7:43:02 AM   ine: 2169
9/9/09 7:43:02 AM   Fatal
9/9/09 7:43:02 AM    error:
9/9/09 7:43:02 AM   NaN detected at ste
9/9/09 7:43:02 AM   p 49500000
9/9/09 7:43:02 AM   For more i
9/9/09 7:43:02 AM   nformation
9/9/09 7:43:02 AM   and tips f
9/9/09 7:43:02 AM   or trouble sh
9/9/09 7:43:02 AM   ooting pleas
9/9/09 7:43:02 AM   e check t
9/9/09 7:43:02 AM   he GROMACS
9/9/09 7:43:02 AM    Wiki at
9/9/09 7:43:02 AM   ht
9/9/09 7:43:02 AM   tp://wiki.g
9/9/09 7:43:02 AM   romacs.org/ind
9/9/09 7:43:02 AM   ex.php/Err
9/9/09 7:43:02 AM   ors
9/9/09 7:43:02 AM   -----
9/9/09 7:43:02 AM   -----------
9/9/09 7:43:02 AM   ----------
9/9/09 7:43:02 AM   ---------
9/9/09 7:43:02 AM   ----------
9/9/09 7:43:02 AM   ----------
9/9/09 7:43:02 AM   Th
9/9/09 7:43:02 AM   anx for Using GROMACS - H
9/9/09 7:43:02 AM   ave a Nice Day
9/9/09 7:43:02 AM   Error on node 0, will try to stop all the nodes
9/9/09 7:43:02 AM   Halting parallel program mdrun on CPU 0 out of 4
9/9/09 7:43:02 AM   gcq#49: Thanx for Using GROMACS - Have a Nice Day
9/9/09 7:43:02 AM   [cli_0]: aborting job:
9/9/09 7:43:02 AM   application called MPI_Abort(MPI
9/9/09 7:43:02 AM   _COMM_WORLD, -1) - process 0
9/9/09 7:43:02 AM   -------------------------------------------------------
9/9/09 7:43:02 AM   Program mdrun, VERS
9/9/09 7:43:02 AM   ION 4.0.99_development_20090605
9/9/09 7:43:02 AM   Source code file: md.c, line: 2169
9/9/09 7:43:02 AM   Fatal error:
9/9/09 7:43:02 AM   NaN detected at step 49500000
9/9/09 7:43:02 AM   For more informa
9/9/09 7:43:02 AM   tion and tips for trouble shooting please check the GROMACS Wiki at
9/9/09 7:43:02 AM   http
9/9/09 7:43:02 AM   ://wik
9/9/09 7:43:02 AM   i.gromacs
9/9/09 7:43:02 AM   .org/ind
9/9/09 7:43:02 AM   ex.php/Er
9/9/09 7:43:02 AM   rors
9/9/09 7:43:02 AM   -------------------------------------------------------
9/9/09 7:43:02 AM   Thanx
9/9/09 7:43:02 AM   for Using GROMACS - Have a Nice Day
9/9/09 7:43:02 AM   Error on node 1, will try to stop all the nodes
9/9/09 7:43:02 AM   Halting parallel program mdrun on CPU 1 ou
9/9/09 7:43:02 AM   t of 4
9/9/09 7:43:02 AM   gcq#49: Thanx for Using GROMACS - Have a Nice Day
9/9/09 7:43:02 AM   [cli_1]: abort
9/9/09 7:43:02 AM   ing job:
9/9/09 7:43:02 AM   application called MPI_Abort(MPI_COMM_WORLD, -1) - process 1
9/9/09 7:43:02 AM   gcq#49: Thanx for Usin
9/9/09 7:43:02 AM   g GROMACS - Have a Nice Day
9/9/09 7:43:02 AM   [cli_2]: aborting job:
9/9/09 7:43:02 AM   application called MPI
9/9/09 7:43:02 AM   _Abort(MPI_COMM_WORLD, -1) - process 2
9/9/09 7:43:02 AM   ---------------------------
9/9/09 7:43:02 AM   ----------------------------
9/9/09 7:43:02 AM   Program mdrun, VERSION 4.0.99_de
9/9/09 7:43:02 AM   velopment_20090605
9/9/09 7:43:02 AM   Sou
9/9/09 7:43:02 AM   rce code fil
9/9/09 7:43:02 AM   e: m
9/9/09 7:43:02 AM   d.c, line: 2169
9/9/09 7:43:02 AM   Fatal error:
9/9/09 7:43:02 AM   NaN de
9/9/09 7:43:02 AM   tected at step 49500000
9/9/09 7:43:02 AM   For more information and tips for trouble shooting please check the GROMACS Wiki at
9/9/09 7:43:02 AM   http://wiki.gromacs.org/index.php/E
9/9/09 7:43:02 AM   rrors
9/9/09 7:43:02 AM   -------------------------------------------------------
9/9/09 7:43:02 AM   Thanx for Using GROMACS -
9/9/09 7:43:02 AM    Have a Nice Day
9/9/09 7:43:02 AM   Error on node 3, will try to stop all the nodes
9/9/09 7:43:02 AM   Halting parallel program mdrun on CPU 3 out of 4
9/9/09 7:43:02 AM   gcq#49: Thanx for Using GROMACS - Have a Nice D
9/9/09 7:43:02 AM   ay
9/9/09 7:43:02 AM   [cli_3]: aborting job:
9/9/09 7:43:02 AM   application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
9/9/09 7:43:46 AM   NNODES=4, MYRANK=1, HOST
9/9/09 7:43:46 AM   NAME=Ron-MacPro.local
9/9/09 7:43:46 AM   NNODE
9/9/09 7:43:46 AM   S=4, MYRANK=0,
9/9/09 7:43:46 AM   HOSTNAME=Ron-MacPro.local
9/9/09 7:43:46 AM   NNODES=4, MYRANK=2
9/9/09 7:43:46 AM   , HOSTNA
9/9/09 7:43:46 AM   ME=Ron-MacPro.local
9/9/09 7:43:46 AM   NNODE
9/9/09 7:43:46 AM   S=4, MYRANK=3, H
9/9/09 7:43:46 AM   OSTNAME=Ron
9/9/09 7:43:46 AM   -MacPro.local
9/9/09 7:43:46 AM   NODEID=0 argc
9/9/09 7:43:46 AM   =20
9/9/09 7:43:46 AM   NODEID=1 argc=
9/9/09 7:43:46 AM   20
9/9/09 7:43:46 AM   NODEID=2
9/9/09 7:43:46 AM   argc=20
9/9/09 7:43:46 AM   NODEID=3 a
9/9/09 7:43:46 AM   rgc=20
9/9/09 7:43:46 AM   Reading file work/
9/9/09 7:43:46 AM   wudata_09.tpr, VERSION 3.3.99_
9/9/09 7:43:46 AM   development_
9/9/09 7:43:46 AM   20070618 (single precisio
9/9/09 7:43:46 AM   n)
9/9/09 7:43:50 AM   Note: tpx file_version 48, sof
9/9/09 7:43:50 AM   tware version 68
9/9/09 7:43:50 AM   NOTE: The tpr file used for
9/9/09 7:43:50 AM    this simulation is in an old
9/9/09 7:43:50 AM    format, f
9/9/09 7:43:50 AM   or less me
9/9/09 7:43:50 AM   mory usage and p
9/9/09 7:43:50 AM   ossibly more pe
9/9/09 7:43:50 AM   rformance cre
9/9/09 7:43:50 AM   ate a new tp
9/9/09 7:43:50 AM   r file with an
9/9/09 7:43:50 AM   up to date ve
9/9/09 7:43:50 AM   rsion of gro
9/9/09 7:43:50 AM   mpp
9/9/09 7:43:50 AM   Making 1D domain decompos
9/9/09 7:43:50 AM   ition 1 x 1 x 4
9/9/09 7:43:50 AM   starting mdrun '
9/9/09 7:43:50 AM   22911 system'
9/9/09 7:43:50 AM   49750000 steps,  99
9/9/09 7:43:50 AM   500.0 ps (con
9/9/09 7:43:50 AM   tinuing from step 49500000,  99000.0 ps).
9/9/09 7:44:25 AM   ----------------------
9/9/09 7:44:25 AM   ---------------------------------
9/9/09 7:44:25 AM   P
9/9/09 7:44:25 AM   rogram mdrun,
9/9/09 7:44:25 AM   VERSION 4.0.99_development_20090605
9/9/09 7:44:25 AM   Source code file: md.c, line: 2169
9/9/09 7:44:25 AM   F
9/9/09 7:44:25 AM   atal error:
9/9/09 7:44:25 AM   NaN detected at step 49500000
9/9/09 7:44:25 AM   For more information and tips for trouble shooting pl
9/9/09 7:44:25 AM   ease check the GROMACS Wiki at
9/9/09 7:44:25 AM   http://wiki.gromacs.org/index.php/Errors
9/9/09 7:44:25 AM   ---
=========truncated the "Have a Nice Day" statements which were repeated multiple times===
9/9/09 7:47:12 AM   [
9/9/09 7:47:12 AM   cli_3]: abort
9/9/09 7:47:12 AM   ing job:
9/9/09 7:47:12 AM   appl
9/9/09 7:47:12 AM   ication called MPI_Abor
9/9/09 7:47:12 AM   t(MPI_COMM_WORL
9/9/09 7:47:12 AM   D, -1) - proc
9/9/09 7:47:12 AM   ess 3
9/9/09 7:47:49 AM   NNODES=4, MYRANK=0,
9/9/09 7:47:49 AM    HOSTNAME=Ron-MacPro.local
9/9/09 7:47:49 AM   NN
9/9/09 7:47:49 AM   ODES=4, MYRAN
9/9/09 7:47:49 AM   K=1, HOSTNA
9/9/09 7:47:49 AM   ME=Ron-MacPro.lo
9/9/09 7:47:49 AM   cal
9/9/09 7:47:49 AM   NNODES=4,
9/9/09 7:47:49 AM    MYRANK=2, H
9/9/09 7:47:49 AM   OSTNAME=Ron
9/9/09 7:47:49 AM   -MacPro.local
9/9/09 7:47:49 AM   NNODES=4, M
9/9/09 7:47:49 AM   YRANK=3, H
9/9/09 7:47:49 AM   OSTNAME=Ron
9/9/09 7:47:49 AM   -MacPro.local
9/9/09 7:47:49 AM   NODEID=0
9/9/09 7:47:49 AM   argc=20
9/9/09 7:47:49 AM   NODEID=1 argc=20
9/9/09 7:47:49 AM   NODEID=2 argc=20
9/9/09 7:47:49 AM   NODEID=3 argc=20
9/9/09 7:47:49 AM   Reading file
9/9/09 7:47:49 AM    work/wudata_02.tpr, VERSION 3.3.99_development_200
9/9/09 7:47:49 AM   70618 (single precision)
9/9/09 7:47:51 AM   Note: tpx file_version 48
9/9/09 7:47:51 AM   , software version 68
9/9/09 7:47:51 AM   NOTE: The tpr file used f
9/9/09 7:47:51 AM   or this simulation is in an old form
9/9/09 7:47:51 AM   at, for less
9/9/09 7:47:51 AM   memory usage and po
9/9/09 7:47:51 AM   ssibly more perfo
9/9/09 7:47:51 AM   rmance create
9/9/09 7:47:51 AM   a new tpr file wi
9/9/09 7:47:51 AM   th an up to dat
9/9/09 7:47:51 AM   e version of
9/9/09 7:47:51 AM   grompp
9/9/09 7:47:51 AM   Making 1D domain decompos
9/9/09 7:47:51 AM   ition 1 x 1 x 4
9/9/09 7:47:51 AM   starting mdrun '22911 system'
9/9/09 7:47:51 AM   49750000 steps,
9/9/09 7:47:51 AM     99500.0 ps (continuing from step
9/9/09 7:47:51 AM   49500000,  990
9/9/09 7:47:51 AM   00.0 ps).

Beberg
Pande Group Member
Posts: 566
Joined: Sat Dec 01, 2007 9:05 pm
Location: Stanford

Re: New OS X installer w/6.24 - please test.

Post by Beberg » Wed Sep 09, 2009 8:11 pm

Yea, that error report is from the core.

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